STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_153Replication protein, putative; [K] COG1475 Predicted transcriptional regulators. (375 aa)    
Predicted Functional Partners:
repA_2
Replication protein; [D] COG1192 ATPases involved in chromosome partitioning.
 
   0.973
RBY4I_65
ParA family ATPase; [D] COG1192 ATPases involved in chromosome partitioning.
 
   0.825
repA_3
RepA partitioning protein/ATPase, ParA type; [D] COG1192 ATPases involved in chromosome partitioning.
 
   0.774
repA_1
ATPase, ParA type; [D] COG1192 ATPases involved in chromosome partitioning.
 
   0.744
gidB
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.594
RBY4I_127
Replication protein C; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
   
 0.575
RBY4I_135
ParB-like nuclease domain family; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
  
     0.526
parA
[D] COG1192 ATPases involved in chromosome partitioning.
  
   0.514
RBY4I_923
[D] COG0489 ATPases involved in chromosome partitioning.
  
   0.514
EDZ47983.1
FAD dependent oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
  
     0.478
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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