STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46328.1Peroxidase; [Q] COG2931 RTX toxins and related Ca2+-binding proteins. (633 aa)    
Predicted Functional Partners:
RBY4I_276
Rb139; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
0.601
EDZ47367.1
Hypothetical protein; [S] COG4886 Leucine-rich repeat (LRR) protein; leucine-rich repeat.
  
  0.554
EDZ47160.1
Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
0.546
EDZ48666.1
Rb139; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
 
0.542
EDZ46940.1
Type I secretion target repeat protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
0.529
EDZ48588.1
[S] COG5448 Uncharacterized conserved protein.
   
   0.528
RBY4I_632
Hypothetical protein; [S] COG5449 Uncharacterized conserved protein; phage conserved hypothetical protein BR0599.
   
   0.528
RBY4I_639
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
  0.488
EDZ45837.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
  0.486
EDZ47930.1
Protein secretion ABC efflux system, permease and ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
 0.456
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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