STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_155[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (124 aa)    
Predicted Functional Partners:
cheA
Chemotaxis protein CheA; [T] COG0642 Signal transduction histidine kinase.
 
 0.988
RBY4I_235
[NT] COG0643 Chemotaxis protein histidine kinase and related kinases.
 
 0.985
RBY4I_215
CheW protein; [NT] COG0835 Chemotaxis signal transduction protein.
 
 0.983
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
  
 0.971
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
  
 0.960
EDZ48604.1
[T] COG3920 Signal transduction histidine kinase.
  
 0.959
EDZ47872.1
Cyanobacterial phytochrome A, putative; [T] COG0642 Signal transduction histidine kinase.
 
 0.947
EDZ47742.1
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; [NT] COG0840 Methyl-accepting chemotaxis protein.
 
 0.942
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
 
0.928
EDZ48653.1
Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.
 
 0.921
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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