STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46349.1[S] COG3220 Uncharacterized protein conserved in bacteria. (284 aa)    
Predicted Functional Partners:
EDZ46713.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.999
EDZ47475.1
Conserved hypothetical protein; [S] COG5572 Predicted integral membrane protein.
 
  
 0.990
EDZ48677.1
DoxX; [S] COG2259 Predicted membrane protein.
 
  
 0.983
RBY4I_276
Rb139; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
    0.813
RBY4I_99
Calcium-transporting ATPase 1 (Golgi Ca(2+)-ATPase); [P] COG2217 Cation transport ATPase.
   
    0.771
RBY4I_232
Putative secreted protein.
   
    0.590
RBY4I_52
FHA domain containing protein.
   
    0.590
EDZ47953.1
[M] COG3209 Rhs family protein; RHS Repeat family.
   
    0.576
EDZ46256.1
AAA ATPase; [U] COG3451 Type IV secretory pathway, VirB4 components.
   
    0.574
EDZ45845.1
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
   
  
 0.537
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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