STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_159[T] COG0631 Serine/threonine protein phosphatase. (241 aa)    
Predicted Functional Partners:
RBY4I_166
Type VI secretion-associated protein, BMA_A0400 family; [S] COG3913 Uncharacterized protein conserved in bacteria.
 
 0.997
icmF
Type VI secretion protein IcmF; [S] COG3523 Uncharacterized protein conserved in bacteria.
 
 
 0.976
RBY4I_167
Type VI secretion protein, VC_A0114 family; [S] COG3522 Uncharacterized protein conserved in bacteria.
 
 
 0.968
RBY4I_205
OmpA family protein; [N] COG1360 Flagellar motor protein.
 
  
 0.968
EDZ46376.1
Dehydrogenase E1 component family; [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.
  
 0.964
RBY4I_163
Conserved hypothetical protein; [R] COG5263 FOG: Glucan-binding domain (YG repeat).
 
 
 0.964
RBY4I_191
Type VI secretion system FHA domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.931
EDZ47021.1
Morn repeat protein; [S] COG2849 Uncharacterized protein conserved in bacteria.
    
  0.924
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.921
RBY4I_195
[RTKL] COG0515 Serine/threonine protein kinase.
 
 
 0.901
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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