STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46386.1Caax amino terminal protease family protein; [R] COG1266 Predicted metal-dependent membrane protease. (296 aa)    
Predicted Functional Partners:
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
    0.700
EDZ46460.1
YcaO-like family; [S] COG1944 Uncharacterized conserved protein.
  
  
 0.673
EDZ47550.1
Conserved hypothetical protein.
 
     0.601
folC
Bifunctional folylpolyglutamate synthase/dihydrofolate syntase; [M] COG0770 UDP-N-acetylmuramyl pentapeptide synthase; Belongs to the folylpolyglutamate synthase family.
       0.556
EDZ47941.1
Conserved hypothetical protein.
  
     0.535
EDZ46102.1
Outer membrane porin.
  
     0.525
EDZ48522.1
Conserved hypothetical protein.
       0.489
EDZ48413.1
[S] COG4093 Uncharacterized protein conserved in bacteria.
  
     0.440
EDZ48715.1
Secretion protein HlyD; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.427
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.