Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
allA[F] COG3194 Ureidoglycolate hydrolase. (163 aa)    
Predicted Functional Partners:
RBY4I_172
Polysaccharide deacetylase; [S] COG3195 Uncharacterized protein conserved in bacteria.
 
 
 0.988
RBY4I_208
Putative allantoin catabolism protein; [R] COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization.
 
  
 0.972
RBY4I_224
Class I monoheme cytochrome c; [S] COG3748 Predicted membrane protein.
 
    0.846
uraH
Hydroxyisourate hydrolase; [R] COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
    0.787
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
    
 0.785
EDZ45794.1
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
     
  0.742
EDZ45899.1
Aminotransferase, classes I and II; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
     
  0.742
RBY4I_175
Threonine aldolase, low-specificity; [E] COG3616 Predicted amino acid aldolase or racemase.
     
  0.742
glcE
Glycolate oxidase, GlcE subunit; [C] COG0277 FAD/FMN-containing dehydrogenases.
     
  0.742
glcF
Glycolate oxidase, iron-sulfur subunit; [C] COG0247 Fe-S oxidoreductase.
     
  0.742
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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