STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46404.1Rhodocoxin reductase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes. (403 aa)    
Predicted Functional Partners:
EDZ47891.1
Ferredoxin; [C] COG0633 Ferredoxin.
 
   0.972
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
   
 0.917
fdhA
Formate dehydrogenase, alpha subunit; [C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  0.913
EDZ47575.1
Cytochrome c family protein.
   
 0.910
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
    
 0.877
RBY4I_526
Putative methyltransferase; [J] COG2263 Predicted RNA methylase.
       0.773
cysI
[P] COG0155 Sulfite reductase, beta subunit (hemoprotein).
 
 
 0.717
EDZ47215.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.703
RBY4I_210
60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC.
  
 0.676
EDZ45822.1
Glycine cleavage T-protein (aminomethyl transferase); [C] COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the GcvT family.
   
  0.675
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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