STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clpVType VI secretion ATPase, ClpV1 family; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family. (907 aa)    
Predicted Functional Partners:
RBY4I_163
Conserved hypothetical protein; [R] COG5263 FOG: Glucan-binding domain (YG repeat).
 
 
 0.968
RBY4I_200
Type VI secretion protein, VC_A0111 family; [S] COG3520 Uncharacterized protein conserved in bacteria.
 
 
 0.968
RBY4I_227
Type VI secretion system lysozyme-related protein; [S] COG3518 Uncharacterized protein conserved in bacteria.
 
  
 0.957
vasA
Type VI secretion protein, VC_A0110 family; [S] COG3519 Uncharacterized protein conserved in bacteria.
 
  
 0.956
RBY4I_211
Virulence protein, SciE type; [R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion.
 
    0.953
RBY4I_222
Type VI secretion protein, EvpB/VC_A0108 family; [S] COG3517 Uncharacterized protein conserved in bacteria.
 
 0.934
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.932
clpP
Clp protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
   
 0.927
EDZ48462.1
Peptidase U35, phage prohead HK97; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 0.927
RBY4I_190
Type VI secretion protein, VC_A0107 family; [S] COG3516 Uncharacterized protein conserved in bacteria.
 
 
 0.922
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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