STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46409.1HemY domain protein; [H] COG3071 Uncharacterized enzyme of heme biosynthesis. (498 aa)    
Predicted Functional Partners:
EDZ46372.1
Conserved hypothetical protein; [M] COG0773 UDP-N-acetylmuramate-alanine ligase.
 
   
 0.904
hemD
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.829
EDZ46501.1
ATP synthase subunits region ORF 4; [QR] COG0500 SAM-dependent methyltransferases.
  
     0.740
EDZ46668.1
Cytochrome c-type biogenesis protein CycH; [O] COG4235 Cytochrome c biogenesis factor.
  
     0.723
addB
Double-strand break repair protein AddB; [L] COG2887 RecB family exonuclease.
  
     0.712
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.690
EDZ47842.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.682
EDZ46077.1
[S] COG1426 Uncharacterized protein conserved in bacteria.
  
     0.647
EDZ46524.1
[S] COG3216 Uncharacterized protein conserved in bacteria.
  
     0.645
EDZ47349.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.627
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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