Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDZ46471.1Conserved hypothetical protein; [R] COG5621 Predicted secreted hydrolase. (349 aa)    
Predicted Functional Partners:
EDZ48507.1
Permease, putative; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
     0.953
EDZ47757.1
Lipoprotein-releasing system ATP-binding protein LolD; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
   
 0.930
EDZ48263.1
Efflux ABC transporter, permease protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
  
 0.698
hemK
protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
    
  0.513
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
     
  0.508
uppS
Undecaprenyl pyrophosphate synthetase 1; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.504
EDZ46584.1
Ion transport 2; [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
       0.486
RBY4I_25
PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins).
   
 
  0.468
etf
Electrotransfer ubiquinone oxidoreductase protein; Accepts electrons from ETF and reduces ubiquinone.
   
 
  0.468
selD
Selenide, water dikinase; [O] COG0309 Hydrogenase maturation factor.
 
     0.406
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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