STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcd[H] COG2154 Pterin-4a-carbinolamine dehydratase. (102 aa)    
Predicted Functional Partners:
RBY4I_858
[S] COG3146 Uncharacterized protein conserved in bacteria.
  
    0.840
hppD
[ER] COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins.
  
  
 0.779
EDZ48589.1
Endoribonuclease L-PSP; [J] COG0251 Putative translation initiation inhibitor, yjgF family.
  
    0.767
EDZ46122.1
[C] COG0584 Glycerophosphoryl diester phosphodiesterase.
   
   0.710
hmgA
[Q] COG3508 Homogentisate 1,2-dioxygenase.
 
  
 0.661
tyrB
[E] COG1448 Aspartate/tyrosine/aromatic aminotransferase.
  
  
 0.609
EDZ47539.1
polyA polymerase family protein; [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
      0.571
fahA
Fumarylacetoacetase; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
  
 0.571
EDZ48710.1
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.523
EDZ48294.1
Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein.
       0.484
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.