STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_184Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (139 aa)    
Predicted Functional Partners:
RBY4I_199
Transport energizing protein, ExbD/TolR family; [U] COG0848 Biopolymer transport protein.
 
     0.934
RBY4I_173
MotA/TolQ/ExbB proton channel; [U] COG0811 Biopolymer transport proteins.
 
     0.912
RBY4I_143
Biopolymer transport protein, ExbD/TolR family, putative; [U] COG0848 Biopolymer transport protein.
 
     0.906
RBY4I_209
TonB, C-terminal domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.728
RBY4I_201
Peptidase C14, caspase catalytic subunit p20; [R] COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.649
RBY4I_195
[RTKL] COG0515 Serine/threonine protein kinase.
  
     0.645
RBY4I_221
Hypothetical protein.
       0.580
RBY4I_151
Type VI secretion-associated protein, ImpA family; [S] COG3515 Uncharacterized protein conserved in bacteria.
 
     0.572
RBY4I_152
Conserved hypothetical protein; [S] COG3157 Hemolysin-coregulated protein (uncharacterized).
 
     0.570
RBY4I_191
Type VI secretion system FHA domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.518
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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