STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46657.1Twin-arginine translocation pathway signal; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (502 aa)    
Predicted Functional Partners:
RBY4I_301
Glucans biosynthesis glucosyltransferase H; [M] COG2943 Membrane glycosyltransferase.
  
 0.983
EDZ48636.1
[S] COG4645 Uncharacterized protein conserved in bacteria.
 
     0.948
EDZ45951.1
Tetratricopeptide repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.883
EDZ46935.1
Thiamine pyrophosphate enzyme, central domain family; [E] COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.
 
     0.670
EDZ46744.1
Conserved hypothetical protein; [P] COG0607 Rhodanese-related sulfurtransferase.
  
     0.496
EDZ48195.1
Conserved hypothetical protein; [Q] COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
     0.455
RBY4I_406
L-carnitine dehydratase/bile acid-inducible protein F; [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
       0.418
EDZ47719.1
[C] COG3038 Cytochrome B561; Belongs to the UPF0312 family.
 
     0.411
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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