STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_19[S] COG1814 Uncharacterized membrane protein. (237 aa)    
Predicted Functional Partners:
RBY4I_46
Efflux transporter, RND family, MFP subunit; [V] COG1566 Multidrug resistance efflux pump.
 
     0.667
RBY4I_64
ABC transporter, inner membrane subunit; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.648
RBY4I_33
Peptidase, M50 family protein; [R] COG0517 FOG: CBS domain; Belongs to the peptidase M50B family.
       0.592
RBY4I_45
Hypothetical protein; [R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); NAD.
       0.592
RBY4I_99
Calcium-transporting ATPase 1 (Golgi Ca(2+)-ATPase); [P] COG2217 Cation transport ATPase.
   
 
 0.537
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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