STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_197Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component. (298 aa)    
Predicted Functional Partners:
EDZ48386.1
Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
 
  
  0.878
RBY4I_210
60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC.
 
     0.872
RBY4I_194
Periplasmic sensor hybrid histidine kinase; [T] COG0784 FOG: CheY-like receiver.
 
  
 0.865
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
  
  
  0.864
phnJ
Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
  
  
 0.855
phnC_1
Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.846
phnL
Phosphonate C-P lyase system protein PhnL; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.843
phnC_2
Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.827
EDZ47744.1
[P] COG3626 Uncharacterized enzyme of phosphonate metabolism.
  
  
 0.817
EDZ48131.1
Phosphonate C-P lyase system protein PhnH; [P] COG3625 Uncharacterized enzyme of phosphonate metabolism.
  
  
 0.812
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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