EDZ46768.1 protein (Rhodobacterales bacterium Y4I)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDZ46768.1

Nirv; [S] COG1262 Uncharacterized conserved protein. (264 aa)

Predicted Functional Partners:

nirK

0.900

EDZ46738.1

0.831

betC

0.752

EDZ47712.1

0.752

EDZ48240.1

0.752

EDZ46593.1

0.706

EDZ46262.1

0.676

norD

0.667

EDZ48515.1

0.667

EDZ45827.1

0.665

Your Current Organism:

Rhodobacterales bacterium Y4I

NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDZ45827.1	EDZ46262.1	RBY4I_1038	RBY4I_1474	Nitric oxide reductase subunit C, cytochrome c; [C] COG2857 Cytochrome c1.	Crp-Fnr regulatory protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.	0.618
EDZ45827.1	EDZ46768.1	RBY4I_1038	RBY4I_1985	Nitric oxide reductase subunit C, cytochrome c; [C] COG2857 Cytochrome c1.	Nirv; [S] COG1262 Uncharacterized conserved protein.	0.665
EDZ45827.1	EDZ48515.1	RBY4I_1038	RBY4I_3738	Nitric oxide reductase subunit C, cytochrome c; [C] COG2857 Cytochrome c1.	Nitric oxide reductase large suBunit, cytochrome b; [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.	0.999
EDZ45827.1	nirK	RBY4I_1038	RBY4I_2822	Nitric oxide reductase subunit C, cytochrome c; [C] COG2857 Cytochrome c1.	Nitrite reductase, copper-containing; [Q] COG2132 Putative multicopper oxidases; Belongs to the multicopper oxidase family.	0.851
EDZ45827.1	norD	RBY4I_1038	RBY4I_1383	Nitric oxide reductase subunit C, cytochrome c; [C] COG2857 Cytochrome c1.	[P] COG4548 Nitric oxide reductase activation protein.	0.993
EDZ46262.1	EDZ45827.1	RBY4I_1474	RBY4I_1038	Crp-Fnr regulatory protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.	Nitric oxide reductase subunit C, cytochrome c; [C] COG2857 Cytochrome c1.	0.618
EDZ46262.1	EDZ46768.1	RBY4I_1474	RBY4I_1985	Crp-Fnr regulatory protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.	Nirv; [S] COG1262 Uncharacterized conserved protein.	0.676
EDZ46262.1	EDZ48515.1	RBY4I_1474	RBY4I_3738	Crp-Fnr regulatory protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.	Nitric oxide reductase large suBunit, cytochrome b; [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.	0.628
EDZ46262.1	nirK	RBY4I_1474	RBY4I_2822	Crp-Fnr regulatory protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.	Nitrite reductase, copper-containing; [Q] COG2132 Putative multicopper oxidases; Belongs to the multicopper oxidase family.	0.735
EDZ46262.1	norD	RBY4I_1474	RBY4I_1383	Crp-Fnr regulatory protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.	[P] COG4548 Nitric oxide reductase activation protein.	0.622
EDZ46593.1	EDZ46768.1	RBY4I_1809	RBY4I_1985	Glutamine amidotransferase class-II domain protein; [R] COG0121 Predicted glutamine amidotransferase.	Nirv; [S] COG1262 Uncharacterized conserved protein.	0.706
EDZ46738.1	EDZ46768.1	RBY4I_1955	RBY4I_1985	Sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.	Nirv; [S] COG1262 Uncharacterized conserved protein.	0.831
EDZ46768.1	EDZ45827.1	RBY4I_1985	RBY4I_1038	Nirv; [S] COG1262 Uncharacterized conserved protein.	Nitric oxide reductase subunit C, cytochrome c; [C] COG2857 Cytochrome c1.	0.665
EDZ46768.1	EDZ46262.1	RBY4I_1985	RBY4I_1474	Nirv; [S] COG1262 Uncharacterized conserved protein.	Crp-Fnr regulatory protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.	0.676
EDZ46768.1	EDZ46593.1	RBY4I_1985	RBY4I_1809	Nirv; [S] COG1262 Uncharacterized conserved protein.	Glutamine amidotransferase class-II domain protein; [R] COG0121 Predicted glutamine amidotransferase.	0.706
EDZ46768.1	EDZ46738.1	RBY4I_1985	RBY4I_1955	Nirv; [S] COG1262 Uncharacterized conserved protein.	Sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.	0.831
EDZ46768.1	EDZ47712.1	RBY4I_1985	RBY4I_2931	Nirv; [S] COG1262 Uncharacterized conserved protein.	[P] COG3119 Arylsulfatase A and related enzymes.	0.752
EDZ46768.1	EDZ48240.1	RBY4I_1985	RBY4I_3460	Nirv; [S] COG1262 Uncharacterized conserved protein.	Phosphonate monoester hydrolase; [P] COG3119 Arylsulfatase A and related enzymes.	0.752
EDZ46768.1	EDZ48515.1	RBY4I_1985	RBY4I_3738	Nirv; [S] COG1262 Uncharacterized conserved protein.	Nitric oxide reductase large suBunit, cytochrome b; [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.	0.667
EDZ46768.1	betC	RBY4I_1985	RBY4I_1772	Nirv; [S] COG1262 Uncharacterized conserved protein.	Choline-sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.	0.752