STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46778.1Conserved hypothetical protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component. (257 aa)    
Predicted Functional Partners:
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
     
  0.844
EDZ46022.1
[I] COG3239 Fatty acid desaturase.
 
     0.815
EDZ46722.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
 
     0.800
EDZ47824.1
Oligopeptide/dipeptide transporter domain family protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
  
  
  0.793
RBY4I_304
[S] COG4103 Uncharacterized protein conserved in bacteria.
       0.791
EDZ48021.1
[S] COG4103 Uncharacterized protein conserved in bacteria.
       0.791
phnL
Phosphonate C-P lyase system protein PhnL; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.763
RBY4I_247
[E] COG4583 Sarcosine oxidase gamma subunit.
  
     0.749
EDZ47214.1
Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
  
 
  0.732
RBY4I_278
Binding-protein-dependent transport systems inner membrane component; [E] COG0765 ABC-type amino acid transport system, permease component.
    
  0.730
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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