STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46792.1GumN family protein; [S] COG3735 Uncharacterized protein conserved in bacteria. (327 aa)    
Predicted Functional Partners:
EDZ47606.1
GumN; [S] COG3735 Uncharacterized protein conserved in bacteria.
 
    
0.679
EDZ46027.1
[S] COG5482 Uncharacterized conserved protein.
       0.523
EDZ47238.1
[S] COG3334 Uncharacterized conserved protein.
    
   0.494
EDZ48581.1
C4-dicarboxylate transport sensor protein; Overlaps another CDS with the same product name.
  
     0.441
ppaC
Inorganic pyrophosphatase, manganese-dependent; [C] COG1227 Inorganic pyrophosphatase/exopolyphosphatase.
       0.439
EDZ48096.1
Conserved hypothetical protein.
  
     0.415
RBY4I_463
Conserved hypothetical protein.
  
     0.408
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.