STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_201Peptidase C14, caspase catalytic subunit p20; [R] COG0790 FOG: TPR repeat, SEL1 subfamily. (499 aa)    
Predicted Functional Partners:
RBY4I_164
Conserved hypothetical protein; [R] COG4249 Uncharacterized protein containing caspase domain.
 
      0.829
RBY4I_195
[RTKL] COG0515 Serine/threonine protein kinase.
 
     0.727
RBY4I_191
Type VI secretion system FHA domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.674
RBY4I_184
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.649
RBY4I_169
YceI like family; [N] COG1360 Flagellar motor protein; Belongs to the UPF0312 family.
  
     0.623
RBY4I_199
Transport energizing protein, ExbD/TolR family; [U] COG0848 Biopolymer transport protein.
  
     0.620
RBY4I_205
OmpA family protein; [N] COG1360 Flagellar motor protein.
 
     0.595
RBY4I_166
Type VI secretion-associated protein, BMA_A0400 family; [S] COG3913 Uncharacterized protein conserved in bacteria.
 
     0.591
RBY4I_196
OmpA/MotB domain protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.518
RBY4I_185
[T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
       0.496
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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