STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46793.1Chorismate synthase; [S] COG3375 Uncharacterized conserved protein. (243 aa)    
Predicted Functional Partners:
menC
O-succinylbenzoic acid synthetase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
     0.975
EDZ46060.1
SIS domain protein; [K] COG1737 Transcriptional regulators.
 
     0.863
EDZ46559.1
Polar amino acid ABC transporter, inner membrane subunit; [E] COG0765 ABC-type amino acid transport system, permease component.
 
     0.712
EDZ47936.1
[E] COG0765 ABC-type amino acid transport system, permease component.
 
     0.693
EDZ47615.1
[P] COG1135 ABC-type metal ion transport system, ATPase component.
 
     0.671
RBY4I_582
[ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
     0.632
EDZ45847.1
Conserved hypothetical protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.534
RBY4I_97
Muconate cycloisomerase 1; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
     0.515
EDZ46425.1
[E] COG1605 Chorismate mutase.
     
  0.508
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
     
  0.508
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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