STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppk_1Polyphosphate kinase 2; [S] COG2326 Uncharacterized conserved protein. (289 aa)    
Predicted Functional Partners:
EDZ46831.1
Conserved hypothetical protein.
   
    0.899
EDZ47520.1
Conserved hypothetical protein.
   
    0.822
EDZ47627.1
[S] COG2841 Uncharacterized protein conserved in bacteria.
   
    0.822
RBY4I_442
Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator.
       0.799
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
   
   0.698
EDZ47788.1
Transcriptional regulator, TraR/DksA family; [T] COG1734 DnaK suppressor protein.
   
    0.648
EDZ47933.1
Conserved hypothetical protein; [T] COG1734 DnaK suppressor protein.
   
    0.648
EDZ48228.1
Alpha/beta hydrolase fold; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.614
ompW
[M] COG3047 Outer membrane protein W.
   
    0.599
ccoG
Cytochrome c oxidase accessory protein CcoG; [C] COG0348 Polyferredoxin.
   
    0.594
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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