STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
EDZ46803.1Two component, sigma54 specific, transcriptional regulator, Fis family; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (469 aa)    
Predicted Functional Partners:
RBY4I_798
Nitrogen regulation protein NtrY; [T] COG0642 Signal transduction histidine kinase.
 0.961
glnL
Nitrogen regulation protein NR(II); [T] COG0642 Signal transduction histidine kinase.
 0.942
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
  
 0.916
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
  
 0.876
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
  
 0.860
EDZ48604.1
[T] COG3920 Signal transduction histidine kinase.
 
 0.815
EDZ45802.1
[T] COG0642 Signal transduction histidine kinase.
 
 0.733
EDZ48653.1
Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.
 
 0.731
EDZ47122.1
Periplasmic sensor hybrid histidine kinase; [T] COG0642 Signal transduction histidine kinase.
 
 0.711
EDZ47235.1
Adenylyl cyclase class-3/4/guanylyl cyclase; [R] COG0457 FOG: TPR repeat.
   
 0.697
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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