node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDZ46347.1 | EDZ46855.1 | RBY4I_1559 | RBY4I_2072 | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | 0.576 |
EDZ46347.1 | EDZ47754.1 | RBY4I_1559 | RBY4I_2973 | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | methylated-DNA--protein-cysteine methyltransferase; [K] COG2207 AraC-type DNA-binding domain-containing proteins. | 0.404 |
EDZ46347.1 | addA | RBY4I_1559 | RBY4I_1653 | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | Double-strand break repair helicase AddA; [L] COG0210 Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily. | 0.611 |
EDZ46347.1 | dnaN | RBY4I_1559 | RBY4I_2348 | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.935 |
EDZ46347.1 | polA | RBY4I_1559 | RBY4I_2830 | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | DNA polymerase I superfamily; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.836 |
EDZ46347.1 | recA | RBY4I_1559 | RBY4I_677 | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.942 |
EDZ46347.1 | recQ | RBY4I_1559 | RBY4I_3028 | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | [LKJ] COG0513 Superfamily II DNA and RNA helicases. | 0.962 |
EDZ46347.1 | topA | RBY4I_1559 | RBY4I_1141 | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.825 |
EDZ46855.1 | EDZ46347.1 | RBY4I_2072 | RBY4I_1559 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | 0.576 |
EDZ46855.1 | EDZ47754.1 | RBY4I_2072 | RBY4I_2973 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | methylated-DNA--protein-cysteine methyltransferase; [K] COG2207 AraC-type DNA-binding domain-containing proteins. | 0.454 |
EDZ46855.1 | EDZ48680.1 | RBY4I_2072 | RBY4I_3903 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Hypothetical protein; [L] COG0210 Superfamily I DNA and RNA helicases. | 0.576 |
EDZ46855.1 | addA | RBY4I_2072 | RBY4I_1653 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Double-strand break repair helicase AddA; [L] COG0210 Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily. | 0.960 |
EDZ46855.1 | dnaN | RBY4I_2072 | RBY4I_2348 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.909 |
EDZ46855.1 | polA | RBY4I_2072 | RBY4I_2830 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | DNA polymerase I superfamily; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.582 |
EDZ46855.1 | recA | RBY4I_2072 | RBY4I_677 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.552 |
EDZ46855.1 | recQ | RBY4I_2072 | RBY4I_3028 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | [LKJ] COG0513 Superfamily II DNA and RNA helicases. | 0.729 |
EDZ46855.1 | topA | RBY4I_2072 | RBY4I_1141 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.668 |
EDZ46855.1 | truB | RBY4I_2072 | RBY4I_2814 | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.783 |
EDZ47754.1 | EDZ46347.1 | RBY4I_2973 | RBY4I_1559 | methylated-DNA--protein-cysteine methyltransferase; [K] COG2207 AraC-type DNA-binding domain-containing proteins. | UvrD/REP helicase domain protein; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | 0.404 |
EDZ47754.1 | EDZ46855.1 | RBY4I_2973 | RBY4I_2072 | methylated-DNA--protein-cysteine methyltransferase; [K] COG2207 AraC-type DNA-binding domain-containing proteins. | Mobilization protein MobL; [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | 0.454 |