STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_211Virulence protein, SciE type; [R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion. (267 aa)    
Predicted Functional Partners:
RBY4I_163
Conserved hypothetical protein; [R] COG5263 FOG: Glucan-binding domain (YG repeat).
 
 
 0.996
RBY4I_190
Type VI secretion protein, VC_A0107 family; [S] COG3516 Uncharacterized protein conserved in bacteria.
 
   0.994
RBY4I_227
Type VI secretion system lysozyme-related protein; [S] COG3518 Uncharacterized protein conserved in bacteria.
 
    0.991
vasA
Type VI secretion protein, VC_A0110 family; [S] COG3519 Uncharacterized protein conserved in bacteria.
 
    0.990
RBY4I_205
OmpA family protein; [N] COG1360 Flagellar motor protein.
 
    0.983
RBY4I_222
Type VI secretion protein, EvpB/VC_A0108 family; [S] COG3517 Uncharacterized protein conserved in bacteria.
 
    0.972
RBY4I_200
Type VI secretion protein, VC_A0111 family; [S] COG3520 Uncharacterized protein conserved in bacteria.
 
    0.963
RBY4I_166
Type VI secretion-associated protein, BMA_A0400 family; [S] COG3913 Uncharacterized protein conserved in bacteria.
 
    0.960
clpV
Type VI secretion ATPase, ClpV1 family; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.
 
    0.953
RBY4I_152
Conserved hypothetical protein; [S] COG3157 Hemolysin-coregulated protein (uncharacterized).
 
    0.919
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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