STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
EDZ46904.1Peptidase C26; [R] COG2071 Predicted glutamine amidotransferases. (259 aa)    
Predicted Functional Partners:
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
    
  0.770
RBY4I_756
Proline dehydrogenase family; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.761
RBY4I_965
[E] COG0174 Glutamine synthetase.
 
 
 0.743
EDZ47404.1
GCN5-related N-acetyltransferase; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.689
EDZ48280.1
Transcriptional regulator, XRE family; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
  
 0.675
RBY4I_528
Gamma-glutamylputrescine oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.663
EDZ46354.1
Aminotransferase, class III family; [E] COG4992 Ornithine/acetylornithine aminotransferase.
  
 
 0.660
EDZ47438.1
[E] COG0174 Glutamine synthetase.
 
 
 0.626
glnA_1
Glutamate--ammonia ligase; [E] COG0174 Glutamine synthetase.
 
 
 0.604
glnA_3
[E] COG0174 Glutamine synthetase.
 
 
 0.586
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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