Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kpsC[M] COG3563 Capsule polysaccharide export protein. (670 aa)    
Predicted Functional Partners:
EDZ46507.1
Polysaccharide biosynthesis/export protein; [M] COG0797 Lipoproteins.
 
  
 0.992
kpsT
Capsular polysaccharide export ATP-binding protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
  
 0.973
kpsE
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family; [M] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
  
 0.972
EDZ47038.1
ABC transporter, permease protein.
 
  
 0.969
kpsS
[M] COG3562 Capsule polysaccharide export protein.
   
 0.950
EDZ46933.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
 
  
 0.838
EDZ47874.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.772
EDZ46782.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.766
RBY4I_420
core-2/I-branching enzyme family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.756
RBY4I_379
Conserved hypothetical protein.
  
     0.737
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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