STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RBY4I_213Transcriptional regulator, IclR family; [K] COG1414 Transcriptional regulator. (277 aa)    
Predicted Functional Partners:
RBY4I_175
Threonine aldolase, low-specificity; [E] COG3616 Predicted amino acid aldolase or racemase.
 
     0.792
RBY4I_78
[E] COG2049 Allophanate hydrolase subunit 1.
  
    0.770
EDZ48188.1
Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family; [K] COG1414 Transcriptional regulator.
  
     0.732
sgaA
[E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
     0.703
RBY4I_777
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
  0.688
RBY4I_231
[E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
     0.684
EDZ46376.1
Dehydrogenase E1 component family; [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.
     
  0.670
RBY4I_148
Serine racemase; [E] COG0031 Cysteine synthase.
 
    0.660
RBY4I_74
[E] COG1984 Allophanate hydrolase subunit 2.
  
    0.649
paaN
Phenylacetic acid degradation protein paaN; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
    
  0.523
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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