Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDZ46917.1ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component. (319 aa)    
Predicted Functional Partners:
RBY4I_986
[V] COG0842 ABC-type multidrug transport system, permease component.
 
 0.988
EDZ48335.1
ABC-2 type transporter; [V] COG0842 ABC-type multidrug transport system, permease component.
 
 0.939
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
  
 
 0.909
nosY
Nitrous oxide maturation protein NosY; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component.
  
 0.850
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
  0.758
EDZ47038.1
ABC transporter, permease protein.
    
 0.743
EDZ48118.1
Efflux ABC transporter, permease protein; [V] COG0842 ABC-type multidrug transport system, permease component.
  
 
 0.741
EDZ46145.1
Membrane protein; [Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
    
 0.734
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
  0.724
EDZ48137.1
ABC transporter, ATP-binding protein; [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase component.
    
  0.714
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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