Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDZ46938.1Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators. (150 aa)    
Predicted Functional Partners:
RBY4I_863
TPR repeat family protein; [S] COG2938 Uncharacterized conserved protein.
 
     0.707
EDZ47349.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.669
EDZ47865.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
       0.631
EDZ47109.1
Metal dependent phosphohydrolase; [R] COG1896 Predicted hydrolases of HD superfamily.
  
     0.608
EDZ46977.1
Surface presentation of antigens protein; [NU] COG1886 Flagellar motor switch/type III secretory pathway protein.
  
    0.597
comF
Competence protein F; [R] COG1040 Predicted amidophosphoribosyltransferases.
  
    0.571
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
   
    0.569
RBY4I_384
DNA protecting protein DprA; [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
   
    0.566
EDZ47731.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.564
EDZ46204.1
Diguanylate cyclase; [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
   
    0.563
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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