STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46940.1Type I secretion target repeat protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (659 aa)    
Predicted Functional Partners:
EDZ48080.1
Type I secretion target repeat protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  0.957
RBY4I_276
Rb139; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 0.867
EDZ45868.1
Hemolysin-type calcium-binding region; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  0.843
RBY4I_122
Hemolysin-type calcium-binding region; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  0.837
EDZ48536.1
Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  0.832
EDZ47092.1
Type I secretion target repeat protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
  0.830
EDZ47748.1
Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.829
RBY4I_377
Type I secretion target repeat protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
  0.804
EDZ46617.1
Bifunctional hemolysin-adenylate cyclase (Cyclolysin) (ACT)(AC-HLY); [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
  0.788
EDZ48666.1
Rb139; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
     0.782
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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