STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46948.1Hypothetical protein; [S] COG1432 Uncharacterized conserved protein; DUF88. (189 aa)    
Predicted Functional Partners:
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.
  
    0.656
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
   0.648
EDZ46058.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
  
     0.593
EDZ47732.1
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
     0.590
EDZ46975.1
[L] COG2927 DNA polymerase III, chi subunit.
  
     0.560
EDZ47109.1
Metal dependent phosphohydrolase; [R] COG1896 Predicted hydrolases of HD superfamily.
  
     0.506
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.496
EDZ46501.1
ATP synthase subunits region ORF 4; [QR] COG0500 SAM-dependent methyltransferases.
  
     0.486
EDZ45954.1
2-deoxycytidine 5-triphosphate deaminase; [F] COG0717 Deoxycytidine deaminase.
  
     0.476
lepB
[U] COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.440
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.