Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_217Conserved hypothetical protein. (108 aa)    
Predicted Functional Partners:
RBY4I_185
[T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
       0.773
cheA
Chemotaxis protein CheA; [T] COG0642 Signal transduction histidine kinase.
       0.661
cheR
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
       0.661
RBY4I_215
CheW protein; [NT] COG0835 Chemotaxis signal transduction protein.
       0.661
RBY4I_201
Peptidase C14, caspase catalytic subunit p20; [R] COG0790 FOG: TPR repeat, SEL1 subfamily.
       0.496
RBY4I_155
[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.442
RBY4I_193
Conserved hypothetical protein.
       0.442
RBY4I_235
[NT] COG0643 Chemotaxis protein histidine kinase and related kinases.
       0.442
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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