STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46953.1Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (194 aa)    
Predicted Functional Partners:
EDZ47150.1
Lipoprotein releasing system, transmembrane protein, LolC/E family; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 
 0.901
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.851
EDZ47383.1
Lipoprotein, putative.
  
 
 
 0.827
EDZ47337.1
N-acetylmuramoyl-L-alanine amidase, family 3; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
    
   0.775
EDZ48397.1
FtsK/SpoIIIE family, putative; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
  
 0.760
EDZ47757.1
Lipoprotein-releasing system ATP-binding protein LolD; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
   
 
 0.744
lolD
Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
   
 
 0.744
RBY4I_63
Lipoprotein-releasing system ATP-binding protein LolD; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
   
 
 0.744
RBY4I_829
Aminotransferase, classes I and II; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
     
 0.712
EDZ45844.1
[S] COG5468 Predicted secreted (periplasmic) protein.
  
     0.701
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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