STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46957.1Conserved hypothetical protein; [J] COG1530 Ribonucleases G and E. (202 aa)    
Predicted Functional Partners:
RBY4I_585
Heparinase II/III family protein; [S] COG5360 Uncharacterized protein conserved in bacteria.
  
     0.740
addB
Double-strand break repair protein AddB; [L] COG2887 RecB family exonuclease.
  
     0.700
RBY4I_798
Nitrogen regulation protein NtrY; [T] COG0642 Signal transduction histidine kinase.
  
     0.637
EDZ47045.1
Sporulation domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.621
RBY4I_370
[M] COG2825 Outer membrane protein.
  
     0.602
EDZ48766.1
OmpA/MotB; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.567
hemK
protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.563
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.563
EDZ46372.1
Conserved hypothetical protein; [M] COG0773 UDP-N-acetylmuramate-alanine ligase.
  
     0.562
EDZ46932.1
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
  
     0.530
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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