STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
RBY4I_219Conserved hypothetical protein. (280 aa)    
Predicted Functional Partners:
EDZ47337.1
N-acetylmuramoyl-L-alanine amidase, family 3; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
    
 0.597
tal
Transaldolase, putative; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
    
 0.574
RBY4I_150
[S] COG3501 Uncharacterized protein conserved in bacteria.
    
  0.548
RBY4I_196
OmpA/MotB domain protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
    0.539
pgi
[G] COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.506
dacB
[M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
     
  0.505
glk
Glucokinase; [G] COG0837 Glucokinase; Belongs to the bacterial glucokinase family.
     
  0.488
tkt
Transketolase; [C] COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component; Belongs to the transketolase family.
     
  0.481
RBY4I_851
Fructose-bisphosphate aldolase class-I; [G] COG3588 Fructose-1,6-bisphosphate aldolase.
     
  0.481
mrdA
Penicillin-binding protein 2; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
 0.472
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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