STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ46974.1Bordetella uptake gene family protein; [S] COG3181 Uncharacterized protein conserved in bacteria. (327 aa)    
Predicted Functional Partners:
EDZ46447.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.965
RBY4I_622
TctA protein; [R] COG1079 Uncharacterized ABC-type transport system, permease component.
 
  
 0.957
EDZ46306.1
Membrane protein; [S] COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.914
EDZ46435.1
Sensor histidine kinase; [T] COG0642 Signal transduction histidine kinase.
 
   
 0.854
EDZ47465.1
Extracellular solute-binding protein, family 1; [P] COG1840 ABC-type Fe3+ transport system, periplasmic component.
 
     0.783
RBY4I_472
[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.717
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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