STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sitCABC Mn+2/Fe+2 transporter, inner membrane subunit SitC; [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components. (293 aa)    
Predicted Functional Partners:
sitA
ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA; [P] COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.
 
 0.998
sitB
ABC Mn+2/Fe+2 transporter, ATPase subunit SitB; [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 0.997
znuC
High affinity zinc uptake system ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 0.969
znuA
Zinc ABC transporter, periplasmic zinc-binding protein; [P] COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin.
 
 
 0.897
sitD
ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component.
 
  
 
0.869
EDZ48024.1
Sugar ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
    
  0.480
RBY4I_233
ABC-3; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component.
  
  
 
0.463
EDZ48137.1
ABC transporter, ATP-binding protein; [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase component.
 
   
 0.402
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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