STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RBY4I_22Radical SAM domain protein; [R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase). (474 aa)    
Predicted Functional Partners:
RBY4I_25
PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins).
 
     0.942
qhpC
Quinohemoprotein amine dehydrogenase gamma subunit.
       0.814
RBY4I_57
Quinohemoprotein amine dehydrogenase, alpha subunit.
       0.781
RBY4I_5
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     0.768
RBY4I_41
Transcriptional Regulator, AraC family, putative; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.596
RBY4I_76
Hypothetical protein.
       0.488
EDZ47654.1
Periplasmic sensor hybrid histidine kinase; [T] COG0642 Signal transduction histidine kinase.
  
     0.424
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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