STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDZ46983.1Transcriptional regulator, GntR family; [K] COG2188 Transcriptional regulators. (233 aa)    
Predicted Functional Partners:
hutI
Imidazolonepropionase; [R] COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.
 
 
 0.809
hutF
Formiminoglutamate deiminase; [FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases.
  
 0.786
hutG
[E] COG3741 N-formylglutamate amidohydrolase.
 
 
 0.783
RBY4I_800
[S] COG3758 Uncharacterized protein conserved in bacteria.
 
  
 0.708
gcvP_1
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.704
gcvP_2
[E] COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain.
     
  0.704
hutH
[E] COG2986 Histidine ammonia-lyase.
 
  
 0.663
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.651
RBY4I_980
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
     0.568
EDZ46743.1
Transcriptional regulatory protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
   
  
 0.566
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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