STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47013.1[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (258 aa)    
Predicted Functional Partners:
EDZ47264.1
AMP-binding enzyme, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
   
 
 0.860
RBY4I_83
Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
 0.854
RBY4I_900
Transcriptional regulator, LysR family; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
      0.852
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.816
rpsP
[J] COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.815
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.815
EDZ47474.1
[J] COG0227 Ribosomal protein L28.
    
   0.815
rpsI
[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
   0.815
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.815
rplQ
[J] COG0203 Ribosomal protein L17.
    
   0.815
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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