Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47022.1Conserved hypothetical protein. (57 aa)    
Predicted Functional Partners:
EDZ46909.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
   0.993
EDZ48101.1
Conserved hypothetical protein.
 
 
 0.987
EDZ48313.1
Phage major tail protein, TP901-1 family; [S] COG5437 Predicted secreted protein.
 
 
   0.980
EDZ46436.1
[R] COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
 
 
 0.966
EDZ47174.1
Phage portal protein, HK97 family; [S] COG4695 Phage-related protein.
 
 
 0.946
RBY4I_632
Hypothetical protein; [S] COG5449 Uncharacterized conserved protein; phage conserved hypothetical protein BR0599.
 
 
   0.945
EDZ48588.1
[S] COG5448 Uncharacterized conserved protein.
 
 
   0.943
EDZ46073.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
   0.901
EDZ45799.1
Phage prohead protease, HK97 family; [R] COG3740 Phage head maturation protease.
 
   
 0.823
RBY4I_757
Tail tape measure protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.822
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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