STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47055.1Conserved hypothetical protein. (507 aa)    
Predicted Functional Partners:
EDZ48427.1
Conserved hypothetical protein.
  
     0.741
RBY4I_295
Tellurite resistance protein.
  
     0.718
RBY4I_327
Divergent polysaccharide deacetylase family; [L] COG2812 DNA polymerase III, gamma/tau subunits.
  
     0.717
RBY4I_813
Conserved hypothetical protein.
  
     0.712
EDZ47329.1
Rhomboid family protein; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
    0.704
EDZ47219.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     
 0.695
EDZ46599.1
Conserved hypothetical protein.
  
     0.670
RBY4I_604
Peptidase M23B; [D] COG4942 Membrane-bound metallopeptidase.
  
     0.670
EDZ48500.1
Conserved hypothetical protein.
  
     0.664
EDZ47763.1
enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.652
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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