STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47057.1[BQ] COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein. (750 aa)    
Predicted Functional Partners:
EDZ47339.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
 0.924
EDZ46690.1
D-alanine--D-alanine ligase domain protein; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes.
     0.918
EDZ47192.1
Conserved hypothetical protein.
    
 0.909
EDZ47758.1
Conserved hypothetical protein; [R] COG2940 Proteins containing SET domain.
  
 0.890
RBY4I_487
Conserved hypothetical protein.
    
 0.889
EDZ46477.1
Conserved hypothetical protein; [O] COG0464 ATPases of the AAA+ class.
   
 0.854
EDZ46069.1
D-alanine--D-alanine ligase domain protein; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes.
     0.851
RBY4I_552
Lysine 2,3-aminomutase YodO family protein; [E] COG1509 Lysine 2,3-aminomutase.
 
  
 0.777
cobB-2
[K] COG0846 NAD-dependent protein deacetylases, SIR2 family; Belongs to the sirtuin family. Class III subfamily.
   
 
 0.746
argG
[E] COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.658
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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