RBY4I_228 protein (Rhodobacterales bacterium Y4I)

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RBY4I_228

Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. (371 aa)

Predicted Functional Partners:

glpK

0.888

RBY4I_160

0.731

lepB

0.698

RBY4I_186

0.673

rplK

0.656

rpoC

0.626

rpsF

0.625

rpsH

0.604

rpsI

0.599

rpsM

0.588

Your Current Organism:

Rhodobacterales bacterium Y4I

NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RBY4I_160	RBY4I_186	RBY4I_160	RBY4I_186	[T] COG0642 Signal transduction histidine kinase.	[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.974
RBY4I_160	RBY4I_228	RBY4I_160	RBY4I_228	[T] COG0642 Signal transduction histidine kinase.	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.731
RBY4I_186	RBY4I_160	RBY4I_186	RBY4I_160	[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	[T] COG0642 Signal transduction histidine kinase.	0.974
RBY4I_186	RBY4I_228	RBY4I_186	RBY4I_228	[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.673
RBY4I_186	rpoC	RBY4I_186	RBY4I_3474	[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.652
RBY4I_228	RBY4I_160	RBY4I_228	RBY4I_160	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	[T] COG0642 Signal transduction histidine kinase.	0.731
RBY4I_228	RBY4I_186	RBY4I_228	RBY4I_186	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.673
RBY4I_228	glpK	RBY4I_228	RBY4I_1022	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	0.888
RBY4I_228	lepB	RBY4I_228	RBY4I_2225	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	[U] COG0681 Signal peptidase I; Belongs to the peptidase S26 family.	0.698
RBY4I_228	rplK	RBY4I_228	RBY4I_2213	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.656
RBY4I_228	rpoC	RBY4I_228	RBY4I_3474	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.626
RBY4I_228	rpsF	RBY4I_228	RBY4I_1114	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.625
RBY4I_228	rpsH	RBY4I_228	RBY4I_1304	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.604
RBY4I_228	rpsI	RBY4I_228	RBY4I_3179	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.599
RBY4I_228	rpsM	RBY4I_228	RBY4I_3372	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Ribosomal protein S13p/S18e; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.588
glpK	RBY4I_228	RBY4I_1022	RBY4I_228	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.888
glpK	rpoC	RBY4I_1022	RBY4I_3474	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.599
lepB	RBY4I_228	RBY4I_2225	RBY4I_228	[U] COG0681 Signal peptidase I; Belongs to the peptidase S26 family.	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.698
rplK	RBY4I_228	RBY4I_2213	RBY4I_228	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.656
rplK	rpoC	RBY4I_2213	RBY4I_3474	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999

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