STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (730 aa)    
Predicted Functional Partners:
EDZ48645.1
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
 
 
 0.992
EDZ46932.1
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
 
 
 0.990
EDZ45976.1
[O] COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
 0.975
yhbN
Cell envelope biogenesis protein YhbN; [S] COG1934 Uncharacterized protein conserved in bacteria.
 
 
 0.933
EDZ48137.1
ABC transporter, ATP-binding protein; [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase component.
 
 
 0.928
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
     
  0.873
EDZ46953.1
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
   
 0.851
yaeT
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.839
RBY4I_568
Glycine betaine/proline ABC transporter, permease protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
     
  0.805
EDZ46102.1
Outer membrane porin.
  
  
 0.798
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (18%) [HD]