Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EDZ47079.1Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase. (234 aa)    
Predicted Functional Partners:
cls
Cardiolipin synthase; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
 
 
  0.574
selO
Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.511
EDZ48324.1
Phospholipase D/Transphosphatidylase; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
 
 
  0.510
EDZ46996.1
[S] COG2898 Uncharacterized conserved protein.
  
  
 0.500
EDZ46044.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
    0.494
EDZ46011.1
Aminotransferase, class V; [E] COG0520 Selenocysteine lyase.
    
   0.493
EDZ46287.1
Aminotransferase, class V; [E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
    
   0.493
EDZ47646.1
Aromatic amino acid beta-eliminating lyase/threonine aldolase; [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
    
   0.493
EDZ44992.1
Aminotransferase, class V; [E] COG0520 Selenocysteine lyase.
    
   0.493
RBY4I_862
[E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.493
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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