STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pxpALamB/YcsF; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (257 aa)    
Predicted Functional Partners:
RBY4I_74
[E] COG1984 Allophanate hydrolase subunit 2.
 
 0.999
RBY4I_78
[E] COG2049 Allophanate hydrolase subunit 1.
 
 
 0.999
RBY4I_756
Proline dehydrogenase family; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.934
RBY4I_47
DctQ; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
       0.786
RBY4I_59
DctM; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
       0.763
EDZ46158.1
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.
  
    0.662
gltA
[C] COG0372 Citrate synthase; Belongs to the citrate synthase family.
   
    0.646
RBY4I_49
DctP; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
       0.582
EDZ47047.1
Hydantoinase/oxoprolinase; [EQ] COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit.
    
 0.523
fdhB
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
    
  0.516
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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