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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RBY4I_231[E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog. (321 aa)    
Predicted Functional Partners:
RBY4I_175
Threonine aldolase, low-specificity; [E] COG3616 Predicted amino acid aldolase or racemase.
   
 0.912
RBY4I_148
Serine racemase; [E] COG0031 Cysteine synthase.
 
 
 0.890
sgaA
[E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
  
  0.890
RBY4I_756
Proline dehydrogenase family; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.849
rocF
Arginase; [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
    
 0.786
EDZ47453.1
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
     
 0.685
RBY4I_385
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
     
 0.685
RBY4I_213
Transcriptional regulator, IclR family; [K] COG1414 Transcriptional regulator.
 
     0.684
RBY4I_777
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
  0.664
EDZ46368.1
[E] COG3938 Proline racemase; Belongs to the proline racemase family.
 
  
 0.663
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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