STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47139.1Tat pathway signal sequence domain protein; [S] COG3108 Uncharacterized protein conserved in bacteria. (189 aa)    
Predicted Functional Partners:
EDZ46213.1
[M] COG3409 Putative peptidoglycan-binding domain-containing protein.
 
     0.870
RBY4I_443
Metallo-beta-lactamase family protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
  
    0.687
mepA
Peptidoglycan amidase MepA; [M] COG3770 Murein endopeptidase.
  
     0.678
lpxD
[M] COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
       0.449
EDZ47858.1
Twin-arginine translocation pathway signal; [S] COG1376 Uncharacterized protein conserved in bacteria.
 
     0.441
EDZ47369.1
[IQ] COG0236 Acyl carrier protein; phosphopantetheine-binding.
       0.406
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.